Dengue, Zika & Chikungunya Viruses Typing Tool Version 0.9 - Alpha

This tool is designed to use Blast and phylogenetic methods in order to identify the Dengue, Zika & Chikungunya Viruses serotypes and genotypes of a nucleotide sequence.

Note for batch analysis: The tool accepts up to 20000 sequences at a time.

You may either:

paste one or more sequences in FASTA format in the input field.
upload a FASTA file.
revisit results of a previous run

A) Paste nucleotide sequence(s) in FASTA format:

>2I_AF100469_Mexico_1992
TCCAGGCTTTACCATAATGGCCGCAATCCTGGCATACACCATAGGAACGACGCATTTCCAAAGAGTCC
TGATATTCATCCTACTGACAGCCATCGCTCCTTCAATGACAATGCGCTGCATAGGAATATCAAATAGG
GACTTTGTGGAAGGAGTGTCAGGAGGGAGTTGGGTTGACATAGTTTTAGAACATGGAAGTTGTGTGAC
GACGATGGCAAAAAATAAACCAACACTGGACTTTGAACTGATAAAAACAGAAGCCAAACAACCCGCCA
CCTTAAGGAAGTACTGTATAGAGGCTAAACTGACCAACACGACAACAGACTCGCGCTGCCCAACACAA
GGGGAACCCACCCTGAATGAAGAGCAGGACAAAAGGTTTGTCTGCAAACATTCTATGGTAGACAGAGG
ATGGGGAAATGGATGTGGATTGTTTGGAAAAGGAGGCATCGTGACCTGTGCTATGTTCACATGCAAAA
AGAACATGGAAGGGAAAATTGTGCAGCCAGAAAACCTGGAATACACTGTCGTGATAACACCTCATTCA
GGGGAAGAACATGCAGTCGGAAATGACACAGGAAAACATGGTAAAGAAGTCAAGATAACACCACAGAG
CTCCATCACAGAGGCGGAACTGACAGGCTATGGCACTGTTACGATGGAGTGCTCTCCAAGAACGGGCC
TCGACTTCAATGAGATGGTGTTGCTGCAAATGGAAGACAAAGCTTGGCTGGTGCACAGACAATGGTTC
>KR815989_Brazil_2015
ACTGGGACTCCACACTGGAACAACAAAGAAGCACTGGTAGAGTTCAAGGACGCACATGCCAAAAGGCA
AACTGTCGTGGTTCTAGGGAGTCAAGAAGGAGCAGTTCACACGGCCCTTGCTGGAGCTCTGGAGGCTG
AGATGGATGGTGCAAAGGGAAGGCTGTCCTCTGGCCACTTGAAATGTCGCCTGAAAATGGATAAACTT
AGATTGAAGGGCGTGTCATACTCCTTGTGTACCGCAGCGTTCACATTCACCAAGATCCCGGCTGAAAC
ACTGCACGGGACAGTCACAGTGGAGGTACAGTACGCAGGGACAGATGGACCTTGCAAG
>H804698_Brazil_2014
AATGAGCGTCGGTGCCCACACTGTGAGCGCGTACGAACACGTAACAGTGATCCCGAACACGGTGGGAG
TACCGTATAAGACTCTAGTCAATAGACCGGGCTACAGTCCCATGGTATTGGAGATGGAACTACTGTCA
GTCACTTTGGAGCCAACGCTATCGCTTGATTACATCACGTGCGAGTACAAAACCGTTATCCCGTCTCC
GTACGTGAAATGCTGCGGTACAGCAGAGTGCAAGGACAAAAACCTACCTGACTACAGCTGTAAGGTCT
TCACCGGCGTCTACCCATTTATGTGGGGCGGAGCCTACTGCTTCTGCGACGCTGAAAACACGCAATTG
AGCGAAGCACACGTGGAGAAGTCCGAATCATGCAAAACAGAATTTGCATCAGCATACAGGGCTCATAC
CGCATCCGCATCAGCTAAGCTCCGCGTCCTTTACCAAGGAAATAACATCACTGTAACTGCCTATGCTA
ACGGCGACCATGCCGTCACAGTTAAGGACGCCAAATTCATTGTGGGGCCAATGTCTTCAGCCTGGACA
CCTTTCGACAACAAAATTGTGGTGTACAAAGGTGACGTCTATAACATGGACTACCCGCCCTTTGGCGC
AGGAAGACCAGGACAATTTGGCGATATCCAAAGTCGCACACCTGAGAGTAAAGACGTCTATGCTAATA
CACAACTGGTACTGCAGAGACCGGCTGCGGGTACGGTACATGTGCCATACTCTCAGGCACCATCTGGC
TTTAAGTATTGGCTAAAAGAACGAGGGGCGTCGCTGCAGCACACAGCACCATTTGGCTGCCAAATAGC
AACAAACCCGGTAAGAGCGGTGAATTGCGCCGTAGGGAACATGCCCATCTCCATCGACATACCGGATG
CGGCCTTCATTAGGGTCGTCGACGCGCCCTCTTTAACGGACATGTCGTGCGAGGTACCAGCCTGCACC
CATTCCTCAGATTTCGGGGGCGTCGCCATTATTAAATATGCAGCCAGCAAGAAAGGCAAGTGTGCGGT
GCATTCGATGACCAACGCCGTCACAATTCGGGAAGCTGAGATAGAAGTTGAAGGGAATTCTCAGCTGC
AAATCTCTTTCTCGACGGCCTTGGCCAGCGCCGAATTCCGCGTACAAGTCTGTTCTACACAAGTACAC
TGTGTAGCCGAGTGCCACCCTCCGAAGGACCACATAGTCAATTACCCGGCGTCACATACCACCCTCGG
GGTCCAGGACATTTCCGCTACGGCGCTGTCATGGGTGCAGAAGATCACGGGAGGCGTGGGACTGGTTG
TCGCTGTTGCAGCACTGATTCTAATCGTGGTGCTATGCGTGTCGTTCAGCAGGCAC

B) Or, upload a FASTA with nucleotide sequences:

C) Or, revisit results from a previous run:

Job-id: